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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015893079.1_cds_XP_016447338.1_42108
CDS Infomation

[gene=LOC107772352] [db_xref=GeneID:107772352] [protein=threonine--tRNA ligase, mitochondrial 1-like isoform X2] [protein_id=XP_016447338.1] [location=complement(join(60897..60992,61725..61796,62536..62607,62720..62941,63083..63175,63755..63847,64618..64712,65205..65289,67420..67506,68732..68828,68896..68984,69676..69765,69850..69978,70084..70158,71005..71094,71685..71744,71871..72108,73169..73329))] [gbkey=CDS]
Sequence

ATGGGAAAAGCTGCGAAAAGTTCCAAAGCTAATTCCACCGCCGCTTACCCTAAAGACGAA
AGTTATCTACAAAACGTTATTCCTAAGCGTATCAAACTCTTCGAATCAATCCAAAACGAG
CAACGCGTTCAGCGCCTTTCGCTCTCCCCTGATCCTATCAAGATCGAGTTACCGAATGGG
ACAATCAAGGAGGGGAAGAAATGGAATACCAGACCATTGGATATAGCAAAGGAGATATCG
AAGAGCTTGGCTTCAAAGGCATTGATCGCTAAGGTGAACGGGGTGCTTTGGGATTTGTTG
AGGCCGTTGGAATGTGATTGTAAGCTAGAGCTCTTCACTTTTGACAGTGATGAAGGTCGC
GACACATTTTGGCACTCGAGTGCTCACATTCTTGGAGAGTCGTTGGAGAGGACATATGGA
TGCAAATTGTGTATTGGACCATGTACAACAAGAGGAGAGGGTTTCTATTATGATGCCTTT
TATGGTGATCTGGGATTAAATGAGGATCATTTTAAACGGATCGAGTCGGAGGCAGCAAAA
GCTGTTTCGGAGAAGCAACCTTTTGAACGCATCGAAGTTTCACGGCAACAAGCTCTTGAT
ATGTTCTCTGACAATAGGTTTAAGGTTGAAATCATTAAGGATTTACCTGAAGATAAAACA
ATCACAGTATACAGATGTGGCCCCTTGGTTGATCTGTGCCGTGGTCCGCATATACCAAAT
ACATCTTTTGTTAAAGCATTAGCTTGTACAAAGGCTTCATCAGCATATTGGAGGGGAGAT
AAGGACCGTGAAAGCTTGCAAAGAGTTTATGGAATATCTTATCCAGATCGAAAACGGTTG
AAGGAATATCTAGTGATGCTGGAGGAAGCAAAGAAATATGATCACAGAGAGCTGGGAAAG
AAGCAGGAGCTTTTCTTTTTTCATTCACTAAGCCCTGGAAGTTGTTTCTTTCTTCCACAT
GGTGCTCGAGTTTGCAACAAATTGCTGGAGTTCATAAAGAGGCAGTATTGGAAGAGAGGC
TACGAGGAGGTTTGGAGTCCAAATATGTACAACATGCAGTTGTGGGAAACTTCTGGTCAT
GCTGCAAATTACAAGGAGAATATGTTTGTGTTTGAGATTGATAAACAAGAATTTGGGCTG
AAGCCAATGAACTGCCCAGGTCATTGTTTAATATTTGATCACAGAGTTCGTTCCTACAGG
GAGCTACCACTTCGTCTGGCTGACTTTGGGGTTCTGCACAGGAATGAGGCCAGTGGTGCA
CTTAGTGGCTTAACTCGTGTTAGGAGATTTCAGCAGAAGCCTGAAAAATATATTGGCGAC
AGAGAAACTTGGGAAAAGGCTGAAACTGCTCTTTTAGAAGCATTAGATGAGTTTGGGAAG
CCCTGGGAGATTAGCAAAGGAGAAGGAGCATTTTACGGCCCAAAAATTGATGTAAGTGTT
TCTGATGCAATGAAGAGGAAATTCCAATGTGCAACATTGCAGCTTGATTTTCAACTCCCT
CAATGTTTCGACCTATCATACTCAGCAGAAGATGAAAGTAGGAGAGAGAGACCAGTAATG
ATACATAGGGCTATCCTTGGGTCAGTTGAGCGTATGTTTGCTATTCTTTTGGAGCATTTC
AAGGGGAAATGGCCTTTCTGGCTTAGTCCACGTCAAGCGATGGTCTGCCCTGTTTCCTAC
AAATTCCAATCGTACGCGCTTGAGATCCGGGAGCGGATACATGATGCTGGTTATTATGTT
GATGTTGATACAAGTGACAGGACAATCCAGAAAAAGGTACGAGAGGCTCAAGTGGCACAA
TATAACTATATTCTGGTTGTTGGAGAAGCAGAAGCCAATAGTGGGCAGGTGAGCGTTCGA
GTAAGAGACCAGCCTGATTATCAAGTCATGACAGTTAACGACCTCCTCGCCCACTTCAAA
GATATGGTTGCATCATTTCAATAG

Peptide Sequence

PEP ID

XP_016447338.1
PEP Infomation

PREDICTED: threonine--tRNA ligase, mitochondrial 1-like isoform X2 [Nicotiana tabacum]
Sequence

MGKAAKSSKANSTAAYPKDESYLQNVIPKRIKLFESIQNEQRVQRLSLSPDPIKIELPNG
TIKEGKKWNTRPLDIAKEISKSLASKALIAKVNGVLWDLLRPLECDCKLELFTFDSDEGR
DTFWHSSAHILGESLERTYGCKLCIGPCTTRGEGFYYDAFYGDLGLNEDHFKRIESEAAK
AVSEKQPFERIEVSRQQALDMFSDNRFKVEIIKDLPEDKTITVYRCGPLVDLCRGPHIPN
TSFVKALACTKASSAYWRGDKDRESLQRVYGISYPDRKRLKEYLVMLEEAKKYDHRELGK
KQELFFFHSLSPGSCFFLPHGARVCNKLLEFIKRQYWKRGYEEVWSPNMYNMQLWETSGH
AANYKENMFVFEIDKQEFGLKPMNCPGHCLIFDHRVRSYRELPLRLADFGVLHRNEASGA
LSGLTRVRRFQQKPEKYIGDRETWEKAETALLEALDEFGKPWEISKGEGAFYGPKIDVSV
SDAMKRKFQCATLQLDFQLPQCFDLSYSAEDESRRERPVMIHRAILGSVERMFAILLEHF
KGKWPFWLSPRQAMVCPVSYKFQSYALEIRERIHDAGYYVDVDTSDRTIQKKVREAQVAQ
YNYILVVGEAEANSGQVSVRVRDQPDYQVMTVNDLLAHFKDMVASFQ

Transcript Sequence

Gene sequence data has not been registered.